Horticulture Research

Volume 12, 2025

2026 2025 2024 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014

Article|05 Nov 2025|OPEN

SSA-mediated selection marker gene activation enhances relative gene targeting efficiency in plants
Article|01 Nov 2025|OPEN

Bee-mediated pollination enhances fruit set and seed yield in Paeonia ostii ‘Fengdan’: insights into physiological and molecular mechanisms
Perspective|25 Oct 2025|OPEN

Building a directed evolution–genome editing pipeline for metabolic traits in specialty crop breeding
Letter to the Editor|25 Oct 2025|OPEN

A near-complete genome assembly of cucumber line 6457 and identification of candidate gene controlling pedicel length
Article|15 Sep 2025|OPEN

Structural composition and evolution of jujube centromere reveal a dominant role for LTR retrotransposon
Article|26 Aug 2025|OPEN

Cytokinin response factor LcARR11 promotes floral bud physiological differentiation by activating LcIPT3 and LcFT1 in litchi
Article|25 Aug 2025|OPEN

A synthetic microbial community derived from healthy apple rhizosphere alleviates apple replant disease
Article|22 Aug 2025|OPEN

H2S modulates BrSDH1-1 alternative splicing to induce stomatal closure in Chinese cabbage
Article|22 Aug 2025|OPEN

AcJAZ2L2 confers resistance to kiwifruit bacterial canker via regulation of JA signaling and stomatal immunity
Article|22 Aug 2025|OPEN

EIN3-binding F-box protein SlEBF3 modulates resistance against Botrytis cinerea and carotenoid biosynthesis by degradation of BBX20 in tomato
Article|22 Aug 2025|OPEN

Decoding hybrid origins and genetic architecture of leaf traits variation in camellia via high-density 21K SNP array for genomic prediction
Article|22 Aug 2025|OPEN

Single-nucleus RNA-sequencing reveals the cellular programs driving nematode-induced giant cell formation in tomato
Article|22 Aug 2025|OPEN

Single-cell transcriptome atlas unveils transcriptional regulation networks of banana root tips in response to Fusarium oxysporum infection
Article|22 Aug 2025|OPEN

High-quality genome assembly of Impatiens noli-tangere reveals key insights into α-linolenic acid biosynthesis and metabolic volatiles
Article|19 Aug 2025|OPEN

Identification and characterization of Bol.TNL.2, a key clubroot resistance gene from cabbage, in Arabidopsis and Brassica napus L.
Article|15 Aug 2025|OPEN

Large-scale analysis of MYB genes in Cucurbitaceae identifies a novel gene regulating plant height
Article|12 Aug 2025|OPEN

Untargeted metabolomic genome-wide association study reveals genetic and biochemical insights into polyphenols of apple fruit
Article|11 Aug 2025|OPEN

RAGA: a reference-assisted genome assembly tool for efficient population-scale assembly
Article|11 Aug 2025|OPEN

CsUGT89A2 enhances tea plant resistance to Toxoptera aurantia by mediating flavonoid glycosides biosynthesis
Article|11 Aug 2025|OPEN

The evolution of the aquaporin gene family and drought tolerance mechanisms in green plants
Article|11 Aug 2025|OPEN

Heterometric expression of an LBD gene via LBD-TCP assembly regulates floral organ size and fruit weight in Physalis
Review Article|11 Aug 2025|OPEN

Epigenetic crop improvement: Integrating ENCODE strategies into horticultural breeding
Review Article|01 Aug 2025|OPEN

Mastering the balance: BAK1’s dual roles in steering plant growth and immunity
Article|31 Jul 2025|OPEN

MdMAPK6-mediated phosphorylation of MdWRKY9 regulates apple fruit ripening through interaction with MdERF5L
Article|31 Jul 2025|OPEN

Phenotypic, genetic, and population structure analysis offer insights into the genetic architecture of root shape in Beta vulgaris
Article|31 Jul 2025|OPEN

Integrated single-cell transcriptomics and spatial metabolomics unveil cellular differentiation and ginsenosides biosynthesis in Panax root tips
Article|31 Jul 2025|OPEN

Genome-wide expression atlas of tomato flower buds revealed the SllncERF162-SlERF162 module associated with basal thermotolerance
Article|29 Jul 2025|OPEN

Precise pigment biosynthesis for flower color design in Brassica napus
Article|29 Jul 2025|OPEN

Telomere-to-telomere genome assembly of yellow-fruited allotetraploid American ginseng (Panax quinquefolius L.) provides insights into flavonoid biosynthesis
Article|29 Jul 2025|OPEN

Analysis of telomere-to-telomere genome of red carrot TXH4 elucidates the role of DcLCYE and DcLCYB1 in lycopene accumulation in carrot
Article|29 Jul 2025|OPEN

Deciphering the underlying genetics of galling resistance to the blueberry stem gall wasp in northern highbush blueberry
Article|29 Jul 2025|OPEN

FveTRM5 plays a critical role in regulating fruit shape in woodland strawberry
Article|28 Jul 2025|OPEN

Systematic identification of terpene synthases from sacred lotus (Nelumbo nucifera) and heterologous biosynthesis of the insecticidal and antimicrobial compound γ-eudesmol
Article|28 Jul 2025|OPEN

SlPPR138-mediated RNA editing of rpoC1 is essential for chloroplast development in tomato
Article|28 Jul 2025|OPEN

A transposon insertion in CmKNAT2-like2 disrupts mottled rind formation in melon (Cucumis melo L.)
Corrigendum|28 Jul 2025|OPEN

Correction to: Discovery of bifunctional diterpene cyclases/synthases in bacteria supports a bacterial origin for the plant terpene synthase gene family
Corrigendum|28 Jul 2025|OPEN

Correction to: A vacuolar invertase gene SlVI modulates sugar metabolism and postharvest fruit quality and stress resistance in tomato
Article|23 Jul 2025|OPEN

Origin and evolution of signaling pathways responsible for ascorbic acid synthesis and catabolism during plant terrestrialization
Article|22 Jul 2025|OPEN

Cysteine-rich receptor-like secreted protein 1 promotes intercellular infection and enhances nodulation in Aeschynomene indica
Article|22 Jul 2025|OPEN

Combination of 3D chromatin architecture and omics analysis provides insight into anthocyanin regulation in Actinidia arguta
Review Article|22 Jul 2025|OPEN

Harnessing apomixis: natural mechanisms and synthetic innovations for advancing crop and forage breeding
Article|21 Jul 2025|OPEN

Evolutionary dynamics and functional divergence of the UDP-glycosyltransferases gene family revealed by a pangenome-wide analysis in tomato
Article|17 Jul 2025|OPEN

AraceaeDB: a functional genomics database of the Araceae family with a focus on konjac glucomannan biosynthesis in Amorphophallus konjac corms
Article|16 Jul 2025|OPEN

The CsMYB36-CsSWEET17 module mediates the calcium-induced sucrose accumulation in citrus
Article|16 Jul 2025|OPEN

First interspecific multi-parent advanced generation inter-cross (MAGIC) population in Capsicum peppers: development, phenotypic evaluation, genomic analysis, and prospects
Article|16 Jul 2025|OPEN

H2S promotes flowering in Brassica rapa ssp. pekinensis by persulfidation of the splicing factor BraATO2
Review Article|16 Jul 2025|OPEN

Volatile organic compounds in Solanum lycopersicum leaves and their roles in plant protection
Review Article|16 Jul 2025|OPEN

Slow and steady wins the race: the negative regulators of ethylene biosynthesis in horticultural plants
Letter to the Editor|16 Jul 2025|OPEN

Deciphering the near-complete genome and conducting pan-genome analysis of Brassica oleracea
Article|11 Jul 2025|OPEN

The pan genome analysis of WOX gene family in apple and the two sides of MdWUS-1 in promoting leaf-borne shoot
Article|09 Jul 2025|OPEN

Uncovering the genetic basis for enhanced mushroom flavor in Quercus fabri through genome sequencing and metabolic profiling
Article|08 Jul 2025|OPEN

Chromosome-specific oligo-painting provides insights into the cytogenetic basis of karyotypic stasis in paleo-allotetraploid Cucurbita
Article|07 Jul 2025|OPEN

Functional characterization of key enzymes involved in the biosynthesis of distinctive flavonoids and stilbenoids in Morus notabilis
Article|07 Jul 2025|OPEN

The MaASR3–MaHDT1 module modulates high-temperature-inhibited chlorophyll breakdown in banana fruit by suppressing the E3 ligase MaNIP1
Article|07 Jul 2025|OPEN

SlALKBH9B is involved in drought-induced flower drop by regulating ethylene production
Article|07 Jul 2025|OPEN

CsCOI1 regulates plant growth and defense in citrus
Article|07 Jul 2025|OPEN

Warming temperature reduces the risk of pre-harvest freezing injury and modifies variety suitability in the main winegrape-growing regions of China
Article|07 Jul 2025|OPEN

Multi-omics analyses reveal the effects of layerage and grafting on flavonoid synthesis and accumulation in Citrus reticulata ‘Chachi’
Review Article|07 Jul 2025|OPEN

Decoding steroid-derived metabolite engineering in Solanum
Article|04 Jul 2025|OPEN

Genome-wide association studies revealed partial genetic links between early vigour and precocity in macadamia
Article|01 Jul 2025|OPEN

Mango pangenome reveals dramatic impacts of reference bias on population genomic analyses
Article|26 Jun 2025|OPEN

Resequencing and phenotyping of the first highly inbred eggplant multiparent population reveal SmLBD13 as a key gene associated with root morphology
Article|26 Jun 2025|OPEN

A nearly complete haplotype-phased genome assembly of nerve plant (Fittonia albivenis) provides insights into leaf color evolution
Article|26 Jun 2025|OPEN

The role of Fragaria vesca homolog of a (Z)-3:(E)-2-hexenal isomerase in the development of green-leafy fruit aroma
Article|26 Jun 2025|OPEN

Correction to: Genomic data uncover complex hybridization and evolutionary history of the bunchberry species complex (Cornus L., Cornaceae)
Article|25 Jun 2025|OPEN

Genomic selection for growth and wood properties in multi-generation hybrid populations of Populus deltoides
Article|25 Jun 2025|OPEN

Sorbitol promotes the graft healing process in pears
Article|25 Jun 2025|OPEN

StMYB113b is a key regulator of red skin pigmentation in potato tubers
Article|25 Jun 2025|OPEN

Integrative linkage mapping, GWAS, and RNA-Seq analysis unravel the genetic architecture and candidate genes for drought tolerance in Chrysanthemum interspecific F1 progeny
Article|24 Jun 2025|OPEN

Walnut genome editing: an optimized CRISPR/Cas9 platform with superior genotypes and endogenous promoters
Article|23 Jun 2025|OPEN

A NAC family gene PmNAC32 associated with photoperiod promotes flower induction in Prunus mume
Article|20 Jun 2025|OPEN

CrWRKY57 and CrABF3 cooperatively activate CrCYCD6;1 to modulate drought tolerance and root development
Article|20 Jun 2025|OPEN

Essential gene dynamics across distinct growth conditions in Xanthomonas citri
Article|18 Jun 2025|OPEN

OVATE family gene CmOFP6-19b negatively regulates fruit size in melon (Cucumis melo L.)
Article|16 Jun 2025|OPEN

OfWRKY33 binds to the promoter of key linalool synthase gene OfTPS7 to stimulate linalool synthesis in Osmanthus fragrans flowers
Article|11 Jun 2025|OPEN

Melatonin in plant pathogen defense: a review of its role in horticultural crops
Article|11 Jun 2025|OPEN

Free fatty acid biosynthesis precursors are involved in pollen–stigma interactions in Brassica
Article|10 Jun 2025|OPEN

The StUBC18-StPUB40 pair negatively regulate drought stress tolerance and influences tuber yield in potato
Article|10 Jun 2025|OPEN

Chromosome-level reference genome of Vitis piasezkii var. pagnucii provides insights into a new locus of resistance to grapevine powdery mildew
Article|09 Jun 2025|OPEN

The BnSEP-BnTFL1s module regulates inflorescence architecture based on light duration in Brassica napus L
Article|09 Jun 2025|OPEN

Single-cell transcriptomic analyses reveal cellular and molecular patterns of rose petal responses to gray mold infection
Article|09 Jun 2025|OPEN

GWAS identifies a molecular marker cluster associated with monoterpenoids in grapes
Article|08 Jun 2025|OPEN

Substantial enhancement of Agrobacterium-mediated transgene-free genome editing via short-term chemical selection using citrus as a model plant
Corrigendum|30 May 2025|OPEN

Correction to: PpTCP18 is upregulated by lncRNA5 and controls branch number in peach (Prunus persica) through positive feedback regulation of strigolactone biosynthesis
Article|30 May 2025|OPEN

Genetic architecture of key traits for Prunus crop improvement: an overview of 25 years of curated genomic and breeding data
Article|29 May 2025|OPEN

CHROMOMETHYLASE3 governs male fertility to affect seed production in tomato
Article|29 May 2025|OPEN

The PlMYB73–PlMYB70–PlMYB108 complex regulates PlTPS1 to promote geraniol biosynthesis in Paeonia lactiflora
Article|29 May 2025|OPEN

Genomic insights into deleterious mutations and their impact on agronomic traits during pear domestication
Article|26 May 2025|OPEN

Overexpression of housekeeping gene FveIPT2 enhances anthocyanin and terpenoid accumulation in strawberry fruits with minimal impact on plant growth and development
Article|23 May 2025|OPEN

Integrating whole-genome resequencing and machine learning to refine QTL analysis for fruit quality traits in peach
Article|23 May 2025|OPEN

CmARF3–CmTCP7 module regulates flowering time in chrysanthemum (Chrysanthemum morifolium)
Article|23 May 2025|OPEN

Genome-wide terpene gene clusters analysis in Euphorbiaceae
Letter to the Editor|23 May 2025|OPEN

In vivo maternal haploid induction in Brassica juncea
Article|21 May 2025|OPEN

QTL detection and candidate gene identification for prostrate growth habit in interspecific crosses of wild chrysanthemum (Chrysanthemum yantaiense × C. indicum)
Article|21 May 2025|OPEN

Deciphering octoploid strawberry evolution with serial LTR similarity matrices for subgenome partition
Article|21 May 2025|OPEN

Identification of 2,3-oxidosqualene cyclase gene in Eleutherococcus senticosus and its regulatory mechanism in saponin synthesis
Article|21 May 2025|OPEN

The GAs–RhMYB70 feedback loop fine-tunes cell expansion and petal size by modulating cellulose content in rose
Article|21 May 2025|OPEN

Recent advances in biosynthesis and regulation of strawberry anthocyanins
Article|21 May 2025|OPEN

BrHDA6 mediates nonhistone deacetylation of BrSOT12 to positively regulate downy mildew resistance in Brassica rapa
Article|21 May 2025|OPEN

Diversified alternaria pathogenicity alters plant–soil feedbacks through leaf–root-microbiome dynamics in agroforestry systems
Article|21 May 2025|OPEN

CmFUL1 was potentially involved in fruit elongation in melon
Letter to the Editor|21 May 2025|OPEN

Opposing regulation of L-theanine biosynthesis by CsWRKY65 and CsWRKY69 in tea plant roots
Article|14 May 2025|OPEN

Developing BrapaCapture40K liquid chip for genetic research and breeding in Brassica rapa
Article|14 May 2025|OPEN

Blueberry ripening mechanism: a systematic review of physiological and molecular evidence
Article|07 May 2025|OPEN

Simulation of dry matter partitioning in cucumber fruits: reflecting gas exchange characteristics based on leaf position and cropping type
Article|07 May 2025|OPEN

PagKNAT5a promotes plant growth by enhancing xylem cell elongation and secondary wall formation in poplar
Article|07 May 2025|OPEN

Telomere to telomere flax (Linum usitatissimum L.) genome assembly unlocks insights beyond fatty acid metabolism pathways
Article|07 May 2025|OPEN

Deep learning empowers genomic selection of pest-resistant grapevine
Article|06 May 2025|OPEN

Functional analysis of a UDP-glucosyltransferase gene contributing to biosynthesis of the flavonol triglycoside in tea plants
Article|02 May 2025|OPEN

CaSun1, a SUN family protein, governs the pathogenicity of Colletotrichum camelliae by recruiting CaAtg8 to promote mitophagy
Article|01 May 2025|OPEN

Genomic origin of Citrus reticulata “Unshiu”
Article|30 Apr 2025|OPEN

Unlocking the molecular secrets of Paeonia plants: advances in key gene mining and molecular breeding technology
Article|30 Apr 2025|OPEN

Phenotypic dynamics and temporal heritability of tomato architectural traits using an unmanned ground vehicle-based plant phenotyping system
Article|30 Apr 2025|OPEN

Optimization and application of genome prediction model in rapeseed: flowering time, yield components, and oil content as examples
Article|30 Apr 2025|OPEN

Scaffold protein RhCASPL1D1 stabilizes RhPIP2 aquaporins and promotes flower recovery after dehydration in rose (Rosa hybrida)
Article|29 Apr 2025|OPEN

High-quality Lindera megaphylla genome analysis provides insights into genome evolution and allows for the exploration of genes involved in terpenoid biosynthesis
Article|29 Apr 2025|OPEN

Studies on the mother flower carnation: past, present, and future
Article|29 Apr 2025|OPEN

Two DNA-binding One Zinc Finger transcription factors, MdCDOF3 and MdDOF3.6, accelerate leaf senescence by activating cytokinin oxidase MdCKX7 in response to sorbitol signaling in apple
Article|28 Apr 2025|OPEN

Evolutionary diversification of acyl-CoA synthetases underpins hydrophobic barrier formation across diverse tomato tissues and beyond
Article|24 Apr 2025|OPEN

The circadian clock module LgPRR7–LgFKF1 negatively regulates flowering time in Luculia gratissima, a woody ornamental plant
Article|24 Apr 2025|OPEN

Integration of GWAS and transcriptome approaches for the identification of nitrogen-, phosphorus-, and potassium-responsive genes in tomato
Article|24 Apr 2025|OPEN

AcABI5a integrates abscisic acid signaling to developmentally modulate fruit ascorbic acid biosynthesis in kiwifruit
Article|24 Apr 2025|OPEN

Linking the structure of vascular bundles and mineral element deposition reveals the hub role of nodes in bamboo
Article|22 Apr 2025|OPEN

Multi-environment GWAS uncovers markers associated to biotic stress response and genotype-by-environment interactions in stone fruit trees
Article|21 Apr 2025|OPEN

Evergreen citrus trees exhibit distinct seasonal nitrogen remobilization patterns between mature leaves and bark
Article|16 Apr 2025|OPEN

The nature of complex structural variations in tomatoes
Article|16 Apr 2025|OPEN

Working smarter, not harder: silencing LAZY1 in Prunus domestica causes outward, wandering branch orientations with commercial and ornamental applications
Review Article|16 Apr 2025|OPEN

Clubroot resistant in cruciferous crops: recent advances in genes and QTLs identification and utilization
Article|10 Apr 2025|OPEN

Haplotype-resolved genome assembly and genome-wide association study identifies the candidate gene closely related to sugar content and tuber yield in Solanum tuberosum
Article|10 Apr 2025|OPEN

The dynamics of wild Vitis species in response to climate change facilitate the breeding of grapevine and its rootstocks with climate resilience
Article|09 Apr 2025|OPEN

CsPRMT5-mediated histone H4R3 dimethylation negatively regulates resistance to gray blight in tea plants (Camellia sinensis L.)
Article|09 Apr 2025|OPEN

Strigolactones enhance apple drought resistance via the MsABI5-MsSMXL1-MsNAC022 cascade
Article|09 Apr 2025|OPEN

Ca2+ suppresses stone cell through PuNAC21–PuDof2.5 module that regulates lignin biosynthesis in pear fruits
Article|25 Mar 2025|OPEN

Metabolite-mediated responses of phyllosphere microbiota to powdery mildew infection in resistant and susceptible black currant cultivars
Article|25 Mar 2025|OPEN

The SmWRKY32-SmbHLH65/SmbHLH85 regulatory module mediates tanshinone biosynthesis in Salvia miltiorrhiza
Article|25 Mar 2025|OPEN

A single-base mutation in promoter of CsTPR enhances the negative regulation on mechanical-related leaf drooping in tea plants
Letter to the Editor|25 Mar 2025|OPEN

Nitrogen addition influences tomato resistance to the destructive invasive pest Tuta absoluta
Article|22 Mar 2025|OPEN

VaMIEL1-mediated ubiquitination of VaMYB4a orchestrates cold tolerance through integrated transcriptional and oxidative stress pathways in grapevine
Article|21 Mar 2025|OPEN

Genomic prediction and association analyses for breeding parthenocarpic blueberries
Article|19 Mar 2025|OPEN

The ZjMYB44-ZjPOD51 module enhances jujube defense response against phytoplasma by upregulating lignin biosynthesis
Article|18 Mar 2025|OPEN

A SlRBP1-SlFBA7/SlGPIMT module regulates fruit size in tomato
Review Article|18 Mar 2025|OPEN

A panomics-driven framework for the improvement of major food legume crops: advances, challenges, and future prospects
Article|12 Mar 2025|OPEN

BrRCO promotes leaf lobe formation by repressing BrACP5 expression in Brassica rapa
Letter to the Editor|11 Mar 2025|OPEN

Water lily pond: a multiomics database for water lilies
Article|11 Mar 2025|OPEN

Uncovering differences in cadmium accumulation capacity of different Ipomoea aquatica cultivars at the level of root cell types
Article|11 Mar 2025|OPEN

The telomere-to-telomere genome of Pucai (graphic) (Typha angustifolia L.): a distinctive semiaquatic vegetable with lignin and chlorophyll as quality characteristics
Article|11 Mar 2025|OPEN

Salicylic acid and jasmonic acid in plant immunity
Article|11 Mar 2025|OPEN

CsWRKY17 enhances Al accumulation by promoting pectin deesterification in tea plant
Article|10 Mar 2025|OPEN

CYP98A monooxygenases: a key enzyme family in plant phenolic compound biosynthesis
Article|10 Mar 2025|OPEN

The E3 ubiquitin ligase SlATL2 suppresses tomato immunity by promoting SlCSN5a degradation during Pseudomonas syringae pv. tomato DC3000 infection
Letter to the Editor|10 Mar 2025|OPEN

A novel bHLH transcription factor PlLHL1 targets PlLAC15 to negatively regulate stem strength by inhibiting syringyl lignin deposition in herbaceous peony
Article|10 Mar 2025|OPEN

Advances in basic biology of alfalfa (Medicago sativa L.): a comprehensive overview
Article|06 Mar 2025|OPEN

A divergent haplotype with a large deletion at the berry color locus causes a white-skinned phenotype in grapevine
Article|05 Mar 2025|OPEN

Expression of poplar sex-determining gene affects plant drought tolerance and the underlying molecular mechanism
Article|05 Mar 2025|OPEN

Plant resistance inducer AMHA enhances antioxidant capacities to promote cold tolerance by regulating the upgrade of glutathione S-transferase in tea plant
Article|04 Mar 2025|OPEN

A chromosome-scale genome assembly and epigenomic profiling reveal temperature-dependent histone methylation in iridoid biosynthesis regulation in Scrophularia ningpoensis
Corrigendum|04 Mar 2025|OPEN

Correction to: Local and systemic transcriptome and spliceome reprogramming induced by the root-knot nematode Meloidogyne incognita in tomato
Corrigendum|04 Mar 2025|OPEN

Correction to: Potassium stimulates fruit sugar accumulation by increasing carbon flow in Citrus sinensis
Article|04 Mar 2025|OPEN

WRKY27-SPDS1 module of Ichang papeda (Citrus ichangensis) promotes cold tolerance by modulating spermidine content
Article|04 Mar 2025|OPEN

The transcription factor MdWRKY9 is involved in jasmonic acid-mediated salt stress tolerance in apple
Article|03 Mar 2025|OPEN

Construction of the super pan-genome for the genus Actinidia reveals structural variations linked to phenotypic diversity
Article|03 Mar 2025|OPEN

Beyond glycolysis: multifunctional roles of glyceraldehyde-3-phosphate dehydrogenases in plants
Article|03 Mar 2025|OPEN

Characterization of a KANADI-like transcription factor that suppresses pear anthocyanin biosynthesis
Article|03 Mar 2025|OPEN

Root-specific expression of CsNPF2.3 is involved in modulating fluoride accumulation in tea plant (Camellia sinensis)
Corrigendum|27 Feb 2025|OPEN

Correction to: The histone H3K27 demethylase SlJMJ4 promotes dark- and ABA-induced leaf senescence in tomato
Article|27 Feb 2025|OPEN

Molecular mechanism of SmMYB53 activates the expression of SmCYP71D375, thereby modulating tanshinone accumulation in Salvia miltiorrhiza
Article|26 Feb 2025|OPEN

Developmental landscape and asymmetric gene expression in the leaf vasculature of Brassica rapa revealed by single-cell transcriptome
Letter to the Editor|26 Feb 2025|OPEN

Three-dimensional genomic structure and aroma formation in the tea cultivar ‘Qiancha 1’
Article|25 Feb 2025|OPEN

Ethylene modulates the phenylpropanoid pathway by enhancing VvMYB14 expression via the ERF5-melatonin-ERF104 pathway in grape seeds
Article|25 Feb 2025|OPEN

Ethylene promotes anthocyanin synthesis in ‘Viviana’ lily via the LvMYB5-LvERF113-LvMYB1 module
Article|25 Feb 2025|OPEN

Stable isotope labelling and gene expression analysis reveal dynamic nitrogen-supply mechanisms for rapid growth of Moso bamboo
Article|25 Feb 2025|OPEN

Temporal fruit microbiome and immunity dynamics in postharvest apple (Malus x domestica)
Corrigendum|24 Feb 2025|OPEN

Correction to: DgbZIP3 interacts with DgbZIP2 to increase the expression of DgPOD for cold stress tolerance in chrysanthemum
Article|20 Feb 2025|OPEN

Integration of digital phenotyping, GWAS, and transcriptomic analysis revealed a key gene for bud size in tea plant (Camellia sinensis)
Article|20 Feb 2025|OPEN

The genome of Vitis vinifera cv. Mgaloblishvili reveals resistance and susceptibility factors to downy mildew in the Rpv29 and Rpv31 loci
Article|19 Feb 2025|OPEN

Sonic-induced cellular vibrations unzip intertwined anther cone trichomes to trigger floral self-pollination and boost tomato fruit size
Article|18 Feb 2025|OPEN

Tea polyphenol mediated CsMYB77 regulation of CsPOD44 to promote tea plant (Camellia sinensis) root drought resistance
Article|18 Feb 2025|OPEN

UDP-glycosyltransferase PpUGT74F2 is involved in fruit immunity via modulating salicylic acid metabolism
Article|18 Feb 2025|OPEN

A chromosome-scale and haplotype-resolved genome assembly of tetraploid blackberry (Rubus L. subgenus Rubus Watson)
Article|18 Feb 2025|OPEN

Carotene hydroxylase DcCYP97A3 affects carotenoid metabolic flow and taproot color by influencing the conversion of α-carotene to lutein in carrot
Letter to the Editor|18 Feb 2025|OPEN

A pectin lyase-like protein from Verticillium dahliae activates immunity in eggplant through translation regulation
Article|12 Feb 2025|OPEN

Temporal dynamics and tissue-specific variations of the blueberry phyllosphere mycobiome
Review Article|12 Feb 2025|OPEN

Shaping the future of bananas: advancing genetic trait regulation and breeding in the postgenomics era
Article|11 Feb 2025|OPEN

Spatiotemporally transcriptomic analyses of floral buds reveal the high-resolution landscape of flower development and dormancy regulation in peach
Article|11 Feb 2025|OPEN

Floral scent emission of Epiphyllum oxypetalum: discovery of its cytosol-localized geraniol biosynthesis
Article|11 Feb 2025|OPEN

Co-silencing of PhENO1 and PhPPT alters anthocyanin production by reducing phosphoenolpyruvate supply in petunia flower
Article|10 Feb 2025|OPEN

Litchi40K v1.0: a cost-effective, flexible, and versatile liquid SNP chip for genetic analysis and digitalization of germplasm resources in litchi
Article|10 Feb 2025|OPEN

Identification and functional characterization of BAHD acyltransferases associated with anthocyanin acylation in blueberry
Article|10 Feb 2025|OPEN

MADS-domain transcription factor AGAMOUS LIKE-9 participates in the gibberellin pathway to promote bud dormancy release of tree peony
Article|07 Feb 2025|OPEN

Telomere-to-telomere genome assembly and 3D chromatin architecture of Centella asiatica insight into evolution and genetic basis of triterpenoid saponin biosynthesis
Article|06 Feb 2025|OPEN

The China National GeneBank Sequence Archive (CNSA) 2024 update
Review Article|04 Feb 2025|OPEN

Citrus genomes: past, present and future
Article|03 Feb 2025|OPEN

Genetic architecture of cherry leaf spot (Blumeriella jaapii) resistance in sour cherry (Prunus cerasus L.) uncovered by QTL analyses in a biparental population genotyped with the 6 + 9 K SNP array
Article|01 Feb 2025|OPEN

Telomere-to-telomere gap-free genome assembly provides genetic insight into the triterpenoid saponins biosynthesis in Platycodon grandiflorus
Article|01 Feb 2025|OPEN

Haplotype-resolved genome of Agastache rugosa (Huo Xiang) provides insight into monoterpenoid biosynthesis and gene cluster evolution
Review Article|01 Feb 2025|OPEN

Structure and release function of fragrance glands
Article|27 Jan 2025|OPEN

Advanced technologies in plant factories: exploring current and future economic and environmental benefits in urban horticulture
Article|27 Jan 2025|OPEN

Fermented chrysanthemum stem as a source of natural phenolic compounds to alleviate tomato bacterial wilt disease
Article|27 Jan 2025|OPEN

Epigenetic modification brings new opportunities for gene capture by transposable elements in allopolyploid Brassica napus
Article|25 Jan 2025|OPEN

Genomic insights into the domestication and genetic basis of yield in papaya
Article|22 Jan 2025|OPEN

Karyotype variation patterns and phenotypic responses of hybrid progenies of triploid loquat (Eriobotrya japonica) provide new insight into aneuploid germplasm innovation
Letter to the Editor|22 Jan 2025|OPEN

Genomic data uncover complex hybridization and evolutionary history of the bunchberry species complex (Cornus L., Cornaceae)
Article|21 Jan 2025|OPEN

Melatonin suppresses ethylene biosynthesis by inhibiting transcription factor MdREM10 during apple fruit ripening
Article|21 Jan 2025|OPEN

PbDELLA-PbMYB56-PbCYP78A6 module regulates GA4 + 7-induced pseudo-embryo development and parthenocarpy in pear (Pyrus bretschneideri)
Article|21 Jan 2025|OPEN

Genome assembly of pomegranate highlights structural variations driving population differentiation and key loci underpinning cold adaption
Article|21 Jan 2025|OPEN

RcSRR1 interferes with the RcCSN5B-mediated deneddylation of RcCRL4 to modulate RcCO proteolysis and prevent rose flowering under red light
Article|15 Jan 2025|OPEN

PhWRKY30 activates salicylic acid biosynthesis to positively regulate antiviral defense response in petunia
Article|15 Jan 2025|OPEN

VviWRKY24 promotes β-damascenone biosynthesis by targeting VviNCED1 to increase abscisic acid in grape berries
Article|14 Jan 2025|OPEN

Genome-wide association studies to assess genetic factors controlling cucumber resistance to CABYV and CMV in crop fields and the attractiveness for their Aphis gossypii vector
Editorial|06 Jan 2025|OPEN

Editorial: introducing dedication reviews—broad reviews in plant and horticultural sciences
Article|05 Jan 2025|OPEN

Wo interacts with SlTCP25 to regulate type I trichome branching in tomato
Article|17 Dec 2024|OPEN

The AREB transcription factor SaAREB6 promotes drought stress-induced santalol biosynthesis in sandalwood
Article|16 Dec 2024|OPEN

MaEIL4-MaMADS36-MaACS7 module transcriptionally regulates ethylene biosynthesis during banana fruit ripening
Article|12 Dec 2024|OPEN

Molecular insights into TT2-type MYB regulators illuminate the complexity of floral flavonoids biosynthesis in Freesia hybrida
Article|12 Dec 2024|OPEN

Metabolomic and transcriptomic analyses provide insight into the variation of floral scent and molecular regulation in different cultivars and flower development of Curcuma alismatifolia
Article|12 Dec 2024|OPEN

Integrative analysis of genome-wide association studies of polyphenols in apple fruits identifies the MdDof2.4-MdPAT10 module that promotes procyanidin accumulation
Method|12 Dec 2024|OPEN

A multi-channel CRISPR-based method for rapid, sensitive detection of four diseases of Brassica rapa in the field
Review Article|12 Dec 2024|OPEN

Comprehensive strategies for paclitaxel production: insights from plant cell culture, endophytic microorganisms, and synthetic biology
Article|06 Dec 2024|OPEN

Advances in the study of senescence mechanisms in the genus Paeonia
Article|06 Dec 2024|OPEN

Deactivating mutations in the catalytic site of a companion serine carboxypeptidase-like acyltransferase enhance catechin galloylation in Camellia plants
Letter to the Editor|05 Dec 2024|OPEN

plantGIR: a genomic database of plants
Article|04 Dec 2024|OPEN

A chromosome-level reference genome facilitates the discovery of clubroot-resistant gene Crr5 in Chinese cabbage
Article|04 Dec 2024|OPEN

LoBLH6 interacts with LoMYB65 to regulate anther development through feedback regulation of gibberellin synthesis in lily
Article|04 Dec 2024|OPEN

Mining the cucumber core collection: phenotypic and genetic characterization of morphological diversity for fruit quality characteristics
Article|02 Dec 2024|OPEN

Telomere-to-telomere, gap-free genome of mung bean (Vigna radiata) provides insights into domestication under structural variation
Review Article|02 Dec 2024|OPEN

Advancements and strategies of genetic improvement in cassava (Manihot esculenta Crantz): from conventional to genomic approaches
Letter to the Editor|29 Nov 2024|OPEN

Population genetics and origin of horticultural germplasm in Clematis via genotyping-by-sequencing
Article|27 Nov 2024|OPEN

Combined genomic, transcriptomic, and metabolomic analyses provide insights into the fruit development of bottle gourd (Lagenaria siceraria)
Article|26 Nov 2024|OPEN

The SEP homologous gene TEMARY regulates inflorescence phenotypes in Hydrangea Macrophylla
Article|26 Nov 2024|OPEN

Characterization of shade tolerance gene network in soybean revealed by forward integrated reverse genetic studies
Article|26 Nov 2024|OPEN

Ancient duplication and functional differentiation of phytochelatin synthases is conserved in plant genomes
Article|26 Nov 2024|OPEN

PIN1a-mediated auxin release from rootstock cotyledon contributes to healing in watermelon as revealed by seeds soaking-VIGS and cotyledon grafting
Review Article|26 Nov 2024|OPEN

Nutrient-dependent regulation of symbiotic nitrogen fixation in legumes
Letter to the Editor|26 Nov 2024|OPEN

A multiplex microfluidic device to detect miRNAs for diagnosis of plant growth status
Article|21 Nov 2024|OPEN

Transcription factors MdEIL1 and MdHY5 integrate ethylene and light signaling to promote chlorophyll degradation in mature apple peels
Article|21 Nov 2024|OPEN

Tomato HAIRY MERISTEM4, expressed in the phloem, is required for proper shoot and fruit development
Article|21 Nov 2024|OPEN

SoNAC72-SoMYB44/SobHLH130 module contributes to flower color fading via regulating anthocyanin biosynthesis by directly binding to the SoUFGT1 promoter in lilac (Syringa oblata)
Article|21 Nov 2024|OPEN

SlKNUCKLES regulates floral meristem activity and controls fruit size in Solanum lycopersicum
Review Article|21 Nov 2024|OPEN

The genus Paris: a fascinating resource for medicinal and botanical studies
Article|20 Nov 2024|OPEN

Integrative multi-environmental genomic prediction in apple
Article|19 Nov 2024|OPEN

Loss-of-function mutations in the fruit softening gene POLYGALACTURONASE1 doubled fruit firmness in strawberry
Article|18 Nov 2024|OPEN

The cytological mechanism of the peach haploid producing triploid offspring
Article|18 Nov 2024|OPEN

Gibberellin promotes theanine synthesis by relieving the inhibition of CsWRKY71 on CsTSI in tea plant (Camellia sinensis)
Article|18 Nov 2024|OPEN

Applied potassium negates osmotic stress impacts on plant physiological processes: a meta-analysis
Article|18 Nov 2024|OPEN

VvARF19 represses VvLBD13-mediated cell wall degradation to delay softening of grape berries
Article|12 Nov 2024|OPEN

Two novel alleles of the MYB transcription factor BjA06.GL1 and BjB02.GL1 control leaf trichomes and enhance resistance to aphids in Brassica juncea
Article|11 Nov 2024|OPEN

A full genome assembly reveals drought stress effects on gene expression and metabolite profiles in blackcurrant (Ribes nigrum L.)
Article|11 Nov 2024|OPEN

The transcription factor ClWRKY61 interacts with ClLEA55 to enhance salt tolerance in watermelon
Article|07 Nov 2024|OPEN

Elucidation of the key flavonol biosynthetic pathway in golden Camellia and its application in genetic modification of tomato fruit metabolism
Article|06 Nov 2024|OPEN

Phased T2T genome assemblies facilitate the mining of disease-resistance genes in Vitis davidii
Article|06 Nov 2024|OPEN

Genome-wide association for agro-morphological traits in a triploid banana population with large chromosome rearrangements
Article|06 Nov 2024|OPEN

Genetic and QTL analyses of sugar and acid content in sweet cherry (Prunus avium L.)
Article|06 Nov 2024|OPEN

Virus-induced gene silencing simultaneously exploits ‘attract and kill’ traits in plants and insects to manage huanglongbing
Letter to the Editor|06 Nov 2024|OPEN

Tonoplast sugar transporters as key drivers of sugar accumulation, a case study in sugarcane
Mini Review|06 Nov 2024|OPEN

Environmental and molecular regulation of flowering in cultivated strawberry (Fragaria x ananassa)
Article|04 Nov 2024|OPEN

The whole-genome dissection of root system architecture provides new insights for the genetic improvement of alfalfa (Medicago sativa L.)
Article|30 Oct 2024|OPEN

Genome-wide analysis of non-coding RNA reveals the role of a novel miR319c for tuber dormancy release process in potato
Review Article|30 Oct 2024|OPEN

Brassica vegetables—an undervalued nutritional goldmine
Letter to the Editor|30 Oct 2024|OPEN

Ectopic biosynthesis of catechin of tea plant can be completed by co-expression of the three CsANS, CsLAR, and CsANR genes
Method|24 Oct 2024|OPEN

Mapping the genomic landscape of Prunus spp. with PrunusMap
Letter to the Editor|24 Oct 2024|OPEN

GenoBaits Cassava35K: high-resolution multi-SNP arrays for genetic analysis and molecular breeding using targeted sequencing and liquid chip technology
Article|23 Oct 2024|OPEN

NpCIPK6–NpSnRK1 module facilitates intersubgeneric hybridization barriers in water lily (Nymphaea) by reducing abscisic acid content
Article|23 Oct 2024|OPEN

The GRAS transcription factor PtrPAT1 of Poncirus trifoliata functions in cold tolerance and modulates glycine betaine content by regulating the BADH-like gene
Article|23 Oct 2024|OPEN

The scion-driven transcriptomic changes guide the resilience of grafted near-isohydric grapevines under water deficit
Article|23 Oct 2024|OPEN

Enhancing CRISPR-Cas-based gene targeting in tomato using a dominant-negative ku80
Article|23 Oct 2024|OPEN

The ubiquitin ligase VviPUB19 negatively regulates grape cold tolerance by affecting the stability of ICEs and CBFs
Article|23 Oct 2024|OPEN

High-quality genome of black wolfberry (Lycium ruthenicum Murr.) provides insights into the genetics of anthocyanin biosynthesis regulation
Article|18 Oct 2024|OPEN

Genomic selection and genetic architecture of agronomic traits during modern flowering Chinese cabbage breeding
Article|18 Oct 2024|OPEN

A transcription factor, PbWRKY24, contributes to russet skin formation in pear fruits by modulating lignin accumulation
Letter to the Editor|15 Oct 2024|OPEN

Disruption of ClOSD1 leads to both somatic and gametic ploidy doubling in watermelon
Article|15 Oct 2024|OPEN

Diversity and interactions of rhizobacteria determine multinutrient traits in tomato host plants under nitrogen and water disturbances
Review Article|15 Oct 2024|OPEN

Genome editing for grass improvement and future agriculture
Article|14 Oct 2024|OPEN

CHH hypermethylation contributes to the early ripening of grapes revealed by DNA methylome landscape of ‘Kyoho’ and its bud mutant
Article|14 Oct 2024|OPEN

CsNAC17 enhances resistance to Colletotrichum gloeosporioides by interacting with CsbHLH62 in Camellia sinensis
Review Article|14 Oct 2024|OPEN

Tissue culture-independent approaches to revolutionizing plant transformation and gene editing
Article|11 Oct 2024|OPEN

The amino acid permease SlAAP6 contributes to tomato growth and salt tolerance by mediating branched-chain amino acid transport
Article|11 Oct 2024|OPEN

Glycerophosphodiester phosphodiesterase 1 mediates G3P accumulation for Eureka lemon resistance to citrus yellow vein clearing virus
Article|09 Oct 2024|OPEN

Circadian rhythms of microbial communities and their role in regulating nitrogen and phosphorus cycling in the rhizosphere of tea plants
Article|09 Oct 2024|OPEN

CRISPR/Cas9-mediated CHS2 mutation provides a new insight into resveratrol biosynthesis by causing a metabolic pathway shift from flavonoids to stilbenoids in Vitis davidii cells
Article|08 Oct 2024|OPEN

Natural variation in MdNAC5 contributes to fruit firmness and ripening divergence in apple
Review Article|08 Oct 2024|OPEN

Recent trends in the elucidation of complex triterpene biosynthetic pathways in horticultural trees
Article|02 Oct 2024|OPEN

The CsTIE1–CsAGL16 module regulates lateral branch outgrowth and drought tolerance in cucumber
Article|02 Oct 2024|OPEN

Two leucine-rich repeat receptor-like kinases initiate herbivory defense responses in tea plants
Article|02 Oct 2024|OPEN

A vacuolar invertase gene SlVI modulates sugar metabolism and postharvest fruit quality and stress resistance in tomato
Article|28 Sep 2024|OPEN

Enhancing aphid resistance in horticultural crops: a breeding prospective
Article|28 Sep 2024|OPEN

The molecular pathways leading to GABA and lactic acid accumulation in florets of organic broccoli rabe (Brassica rapa subsp. sylvestris) stored as fresh or as minimally processed product
Article|28 Sep 2024|OPEN

Violet LED light-activated MdHY5 positively regulates phenolic accumulation to inhibit fresh-cut apple fruit browning
Article|28 Sep 2024|OPEN

Grapevine cell response to carbon deficiency requires transcriptome and methylome reprogramming
Article|28 Sep 2024|OPEN

A cost-effective oligo-based barcode system for chromosome identification in longan and lychee
Article|28 Sep 2024|OPEN

BcWRKY25-BcWRKY33A-BcLRP1/BcCOW1 module promotes root development for improved salt tolerance in Bok choy
Article|25 Sep 2024|OPEN

Expansion and functional divergence of terpene synthase genes in angiosperms: a driving force of terpene diversity
Article|25 Sep 2024|OPEN

Targeted mutation of BnaMS1/BnaMS2 combined with the RUBY reporter enables an efficient two-line system for hybrid seed production in Brassica napus
Article|24 Sep 2024|OPEN

Genome-wide association analysis of flowering date in a collection of cultivated olive tree
Article|24 Sep 2024|OPEN

OfWRKY17-OfC3H49 module responding to high ambient temperature delays flowering via inhibiting OfSOC1B expression in Osmanthus fragrans
Review Article|24 Sep 2024|OPEN

Genomes and integrative genomic insights into the genetic architecture of main agronomic traits in the edible cherries
Article|20 Sep 2024|OPEN

Chromatin accessibility profile and the role of PeAtf1 transcription factor in the postharvest pathogen Penicillium expansum
Article|20 Sep 2024|OPEN

Oligo-FISH barcode chromosome identification system provides novel insights into the natural chromosome aberrations propensity in the autotetraploid cultivated alfalfa
Article|16 Sep 2024|OPEN

Genome-wide mapping of main histone modifications and coordination regulation of metabolic genes under salt stress in pea (Pisum sativum L)
Article|16 Sep 2024|OPEN

Integrated genome-wide association and transcriptomic studies reveal genetic architecture of bulb storability of plentiful garlic germplasm resources
Article|16 Sep 2024|OPEN

Genome-wide screen and multi-omics analysis reveal OGT1 participate in the biosynthesis of safflower flavonoid glycosides
Review Article|16 Sep 2024|OPEN

Revisiting the role of light signaling in plant responses to salt stress
Perspective|16 Sep 2024|OPEN

Decoding the genetic basis of secretory tissues in plants
Article|11 Sep 2024|OPEN

Graft incompatibility between pepper and tomato elicits an immune response and triggers localized cell death
Article|09 Sep 2024|OPEN

High-resolution genetic map and SNP chip for molecular breeding in Panax ginseng, a tetraploid medicinal plant
Perspective|09 Sep 2024|OPEN

Converging functional phenotyping with systems mapping to illuminate the genotype–phenotype associations
Article|05 Sep 2024|OPEN

De novo gene integration into regulatory networks via interaction with conserved genes in peach
Article|05 Sep 2024|OPEN

TOR balances plant growth and cold tolerance by orchestrating amino acid-derived metabolism in tomato
Article|04 Sep 2024|OPEN

Haplotype-resolved nonaploid genome provides insights into in vitro flowering in bamboos
Article|03 Sep 2024|OPEN

A telomere-to-telomere gap-free reference genome of Chionanthus retusus provides insights into the molecular mechanism underlying petal shape changes
Article|03 Sep 2024|OPEN

Apple vacuolar sugar transporters regulated by MdDREB2A enhance drought resistance by promoting accumulation of soluble sugars and activating ABA signaling
Letter to the Editor|30 Aug 2024|OPEN

A glimpse of light on the mystery of regulating temperate fruit tree blooming time
Review Article|30 Aug 2024|OPEN

Malus sieversii: a historical, genetic, and conservational perspective of the primary progenitor species of domesticated apples